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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_23_4381829_4382514_F

Intron Information:

Intron Rank:
16
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
4381829 - 4382514
Intron Length:
686

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTAATTAAC
5'SS Class:
strong_major
3'SS Sequence:
TTAACTCCCCTAG|A
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TCTTTAA
U12 Branch Point Sequence:
ATCTCTTTAACT
Flanking Amino Acid:
NEGTKCGAGKICRHFQCVSA
Intron Amino Acid Position:
621

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
87.1
0.87
0.9
83.3
28.2
Major BPS
74.7
0.61
1
65.9
40.9
Major PPT
67.4
0.39
0.9
59.3
37.8
Minor 5ss
36.1
-1.6
2.7
45.4
42.7
Minor BPS
83.3
1.12
1
90.07
34.1

Associated Gene:

Gene:
ADAM9
Ensembl Gene ID:
ENSAPLG00000005808
Chromosome:
23

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000006181
4369112 - 4383512
14401