Gene Search

About Basic Search Advanced Search Downloads

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_23_4382596_4383398_F

Intron Information:

Intron Rank:

Intron Class:

major

Intron Phase:

Intron Coordinates:

4382596 - 4383398

Intron Length:

803

Sequence Information:

Terminal Dinucleotides:

GT-AG

5'SS Sequence:

GGG|GTAAGTAGT

5'SS Class:

strong_major

3'SS Sequence:

TATTTAAATATAG|G

3'SS Class:

major_PPT

U2 Branch Point Sequence:

TTTTTAT

U12 Branch Point Sequence:

TTTTATTTAAAT

Flanking Amino Acid:

DVERQCHGHGVCNNNRNCHC

Intron Amino Acid Position:

648

Site Scores:

Score

LOD

LOD StDev

Match

Match StDev

Major 5ss

87.6

0.89

0.9

81.8

38.5

Major BPS

96.5

1.15

0.6

34.2

Major PPT

69.8

0.45

64.2

40.6

Minor 5ss

-1.5

2.8

43.2

43.8

Minor BPS

73.4

0.81

1.5

90.39

32.8

Associated Gene:

Gene:

ADAM9

Ensembl Gene ID:

ENSAPLG00000005808

Chromosome:

Associated Transcripts:

Ensembl Transcript ID

Transcript Coordinates

Transcript Length

ENSAPLT00000006181

4369112 - 4383512

14401