About Basic Search Advanced Search Downloads

© 2019-2022 Kanadia Lab,
PNB, Uconn

Construction by: Audrey Weber

Contact Us

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_23_4389925_4390014_F

Intron Information:

Intron Rank:
2
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
4389925 - 4390014
Intron Length:
90

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTACCGGGG
5'SS Class:
major
3'SS Sequence:
GTGCCCCTCACAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTCCCAG
U12 Branch Point Sequence:
GTGCCCCTCACA
Flanking Amino Acid:
IHLQHTCSGLRGLLQFENAS
Intron Amino Acid Position:
20

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
63.7
0.32
1.3
49.8
46.9
Major BPS
49.3
-0
1.7
66.4
42.2
Major PPT
68.7
0.42
0.9
61
35.2
Minor 5ss
33.1
-1.9
3.7
46.9
48.5
Minor BPS
48.2
-0.1
2.1
62.56
43.1

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000006063
Chromosome:
23

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000006277
4389465 - 4395526
6062