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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_23_4390202_4390885_F

Intron Information:

Intron Rank:
3
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
4390202 - 4390885
Intron Length:
684

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GAA|GTGAGCTGC
5'SS Class:
major
3'SS Sequence:
TGTTGTTTTCCAG|T
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTCTTAC
U12 Branch Point Sequence:
CCATTCTTACAC
Flanking Amino Acid:
EMVLKIVYGEYNYMGSDKKV
Intron Amino Acid Position:
83

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
73.8
0.56
1
63
38.7
Major BPS
81.5
0.78
0.9
71.6
36.1
Major PPT
85.2
0.79
0.9
76.9
42.1
Minor 5ss
40.5
-1.1
3
50.1
40.9
Minor BPS
49.1
-0
1.7
55.42
43

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000006063
Chromosome:
23

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000006277
4389465 - 4395526
6062