Gene Search

About Basic Search Advanced Search Downloads

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_23_4390958_4391526_F

Intron Information:

Intron Rank:

Intron Class:

major

Intron Phase:

Intron Coordinates:

4390958 - 4391526

Intron Length:

569

Sequence Information:

Terminal Dinucleotides:

GT-AG

5'SS Sequence:

AAT|GTAAGTTTT

5'SS Class:

strong_major

3'SS Sequence:

GTCACGTTTTCAG|A

3'SS Class:

major_PPT

U2 Branch Point Sequence:

ATCTCAC

U12 Branch Point Sequence:

GCCATCTCACCT

Flanking Amino Acid:

IIQIFNLVNNIFNPLNVTIV

Intron Amino Acid Position:

107

Site Scores:

Score

LOD

LOD StDev

Match

Match StDev

Major 5ss

87.2

0.88

0.9

89.9

23.2

Major BPS

76.2

0.65

0.9

77.4

26.5

Major PPT

73.4

0.53

68.8

41.8

Minor 5ss

48.6

-0.1

2.8

71.8

38.1

Minor BPS

45.1

-0.2

1.8

56.87

45.6

Associated Gene:

Gene:

Ensembl Gene ID:

ENSAPLG00000006063

Chromosome:

Associated Transcripts:

Ensembl Transcript ID

Transcript Coordinates

Transcript Length

ENSAPLT00000006277

4389465 - 4395526

6062