About Basic Search Advanced Search Downloads

© 2019-2022 Kanadia Lab,
PNB, Uconn

Construction by: Audrey Weber

Contact Us

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_23_4391923_4392029_F

Intron Information:

Intron Rank:
6
Intron Class:
major-like
Intron Phase:
2
Intron Coordinates:
4391923 - 4392029
Intron Length:
107

Sequence Information:

Terminal Dinucleotides:
GC-AG
5'SS Sequence:
GCG|GCCGGGACC
5'SS Class:
major
3'SS Sequence:
AGTACCAGCGCAG|C
3'SS Class:
degenerate_major
U2 Branch Point Sequence:
GTACCAG
U12 Branch Point Sequence:
CCCCCAGTACCA
Flanking Amino Acid:
AGAVAVVRGLRVTLESFSVL
Intron Amino Acid Position:
194

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
63.8
0.33
1.3
66
36.3
Major BPS
39.7
-0.6
1.7
46.5
46.6
Major PPT
55.7
0.13
1
47.9
39.6
Minor 5ss
17.7
-3.7
3.7
27.1
36.2
Minor BPS
38.3
-0.8
2.3
45.02
44

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000006063
Chromosome:
23

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000006277
4389465 - 4395526
6062