Gene Search

About Basic Search Advanced Search Downloads

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_23_4392841_4393199_F

Intron Information:

Intron Rank:

Intron Class:

major

Intron Phase:

Intron Coordinates:

4392841 - 4393199

Intron Length:

359

Sequence Information:

Terminal Dinucleotides:

GC-AG

5'SS Sequence:

CAG|GCAAGTCAT

5'SS Class:

strong_major

3'SS Sequence:

CCTCTCTCGCCAG|T

3'SS Class:

major_PPT

U2 Branch Point Sequence:

TTGTGAG

U12 Branch Point Sequence:

ATTGTGAGAAAG

Flanking Amino Acid:

SSGLCCDGCQFKAKNSLCRP

Intron Amino Acid Position:

331

Site Scores:

Score

LOD

LOD StDev

Match

Match StDev

Major 5ss

98.1

1.13

0.7

82.7

36.5

Major BPS

57.3

0.18

1.7

57.1

49.4

Major PPT

71.5

0.48

0.9

36.3

Minor 5ss

25.6

-2.8

3.8

40.4

45.7

Minor BPS

36.4

-1.1

2.2

44.41

41.2

Associated Gene:

Gene:

Ensembl Gene ID:

ENSAPLG00000006063

Chromosome:

Associated Transcripts:

Ensembl Transcript ID

Transcript Coordinates

Transcript Length

ENSAPLT00000006277

4389465 - 4395526

6062