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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_23_439757_440667_F

Intron Information:

Intron Rank:
6
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
439757 - 440667
Intron Length:
911

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CTG|GTAATGCCC
5'SS Class:
major
3'SS Sequence:
TCTCTCATTCCAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
CTCTCAT
U12 Branch Point Sequence:
TTTCTCTCATTC
Flanking Amino Acid:
TLVERVIQQLEGAFALVFKS
Intron Amino Acid Position:
213

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
69.4
0.46
1.1
56
41.2
Major BPS
82.6
0.81
0.9
83.3
27.7
Major PPT
82.3
0.73
0.8
73.8
35.4
Minor 5ss
32.2
-2
3.3
40.3
39.7
Minor BPS
51.6
0.03
1.8
67.67
38.2

Associated Gene:

Gene:
GFPT1
Ensembl Gene ID:
ENSAPLG00000000806
Chromosome:
23

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000043804
426624 - 468100
41477
ENSAPLT00000036978
426624 - 457293
30670
ENSAPLT00000018524
426624 - 457293
30670
ENSAPLT00000001166
432527 - 457207
24681