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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_23_440730_441607_F

Intron Information:

Intron Rank:
7
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
440730 - 441607
Intron Length:
878

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTAAGTATT
5'SS Class:
strong_major
3'SS Sequence:
TCTTCTCTTGCAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTGTAAC
U12 Branch Point Sequence:
AGGCTTGTAACC
Flanking Amino Acid:
VHYPGQAVGTRRGSPLLIGV
Intron Amino Acid Position:
233

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
100
1.18
0.6
100
0
Major BPS
74.5
0.61
1.1
75.6
36.6
Major PPT
89.3
0.88
0.6
84.5
23.3
Minor 5ss
41.7
-0.9
2.9
59.7
44.8
Minor BPS
46.4
-0.2
1.9
54.1
37.9

Associated Gene:

Gene:
GFPT1
Ensembl Gene ID:
ENSAPLG00000000806
Chromosome:
23

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000043804
426624 - 468100
41477
ENSAPLT00000036978
426624 - 457293
30670
ENSAPLT00000018524
426624 - 457293
30670
ENSAPLT00000001166
432527 - 457207
24681