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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_23_4410322_4410434_F

Intron Information:

Intron Rank:
6
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
4410322 - 4410434
Intron Length:
113

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AGC|GTGAGTTGC
5'SS Class:
major
3'SS Sequence:
TGTCTGCTTCCAG|A
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TCTGGAC
U12 Branch Point Sequence:
GGGCTCTGGACC
Flanking Amino Acid:
IVQLFSYVNSMFSRLNLTIA
Intron Amino Acid Position:
228

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
64.3
0.34
1.3
60.1
41.9
Major BPS
49.6
-0
1.4
51
44.3
Major PPT
79
0.65
0.9
69.5
41.7
Minor 5ss
36
-1.6
2.8
39
39.8
Minor BPS
48.2
-0.1
1.5
53.23
38

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000006066
Chromosome:
23

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000006313
4408056 - 4415318
7263