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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_23_4411765_4412219_F

Intron Information:

Intron Rank:
11
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
4411765 - 4412219
Intron Length:
455

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTAAGCTGT
5'SS Class:
strong_major
3'SS Sequence:
CTCTTCCCACTAG|T
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TATGCAA
U12 Branch Point Sequence:
CTCTTCCCACTA
Flanking Amino Acid:
LSGPCCWKCKFAKSSTLCRT
Intron Amino Acid Position:
447

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
89.7
0.94
0.9
78.8
38.3
Major BPS
58
0.2
1.3
69.6
37.5
Major PPT
69.7
0.44
0.8
63.5
32.9
Minor 5ss
45.6
-0.5
2.9
65
46.2
Minor BPS
41.7
-0.6
2
51.03
41.4

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000006066
Chromosome:
23

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000006313
4408056 - 4415318
7263