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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_23_4413893_4414154_F

Intron Information:

Intron Rank:
16
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
4413893 - 4414154
Intron Length:
262

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CCG|GTGAGCAGC
5'SS Class:
major
3'SS Sequence:
TCCCTGTGCCTAG|A
3'SS Class:
major_PPT
U2 Branch Point Sequence:
GGCTGAA
U12 Branch Point Sequence:
GTGGGCTGAAGG
Flanking Amino Acid:
GGSKDSPLSADEAGLQNKDP
Intron Amino Acid Position:
673

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
75.5
0.6
1
63.5
42.9
Major BPS
49.7
-0
1.3
43.1
41.8
Major PPT
63.6
0.31
0.9
56.6
38.7
Minor 5ss
34.8
-1.7
2.9
43.9
43.7
Minor BPS
41.3
-0.8
2.2
44.43
47.2

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000006066
Chromosome:
23

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000006313
4408056 - 4415318
7263