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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_23_4416801_4417271_F

Intron Information:

Intron Rank:
2
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
4416801 - 4417271
Intron Length:
471

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTAAACTGC
5'SS Class:
major
3'SS Sequence:
GGTCTCGTTGTAG|A
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TGCTCAC
U12 Branch Point Sequence:
CCGTGCTCACCA
Flanking Amino Acid:
SHRLRSRVHQMPQLSTRHLR
Intron Amino Acid Position:
57

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
78.8
0.68
1
66.5
40.4
Major BPS
69.8
0.49
1.1
71.3
36.7
Major PPT
68.6
0.42
1
61.9
39.9
Minor 5ss
43.5
-0.7
3
59.3
45.5
Minor BPS
43.1
-0.5
2.2
50.56
47

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000006102
Chromosome:
23

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000039843
4416113 - 4422417
6305