About Basic Search Advanced Search Downloads
Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_23_441688_442586_F


Intron Information:

Intron Rank:
8

Intron Class:
major

Intron Phase:
1

Intron Coordinates:
441688 - 442586

Intron Length:
899

Sequence Information:

Terminal Dinucleotides:
GT-AG

5'SS Sequence:
CGG|GTAAGCGTG

5'SS Class:
major

3'SS Sequence:
ATTGCACTTTCAG|C

3'SS Class:
major_PPT

U2 Branch Point Sequence:
TGATGAT

U12 Branch Point Sequence:
TTTTTCCCGATT

Flanking Amino Acid:
TDHIPILYRTAVQSMDHSFD

Intron Amino Acid Position:
260

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev

Major 5ss
79.6
0.7
1
67.1
44.6

Major BPS
69.5
0.48
1.2
59.7
46.7

Major PPT
75.9
0.58
0.9
71.1
39.3

Minor 5ss
39.5
-1.2
3.4
47.2
48.2

Minor BPS
53.3
0.18
1.9
79.66
36.4

Associated Gene:

Gene:
GFPT1

Ensembl Gene ID:

Chromosome:
23

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length

426624 - 468100
41477

426624 - 457293
30670

432527 - 457207
24681