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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_23_4420633_4422064_F

Intron Information:

Intron Rank:
8
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
4420633 - 4422064
Intron Length:
1432

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GCA|GTAAGTCAA
5'SS Class:
major
3'SS Sequence:
TGGTGTTTTGCAG|C
3'SS Class:
major_PPT
U2 Branch Point Sequence:
CCCTCAA
U12 Branch Point Sequence:
CTCCCCTCAACT
Flanking Amino Acid:
LLGIRHSQESTAFLHRMRDY
Intron Amino Acid Position:
261

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
75.6
0.6
1
68.2
38.6
Major BPS
60.8
0.27
1.1
63.2
34.1
Major PPT
79
0.65
1
72.9
42.2
Minor 5ss
35.7
-1.6
2.9
46.8
42.6
Minor BPS
65.1
0.55
1.6
77.75
44.4

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000006102
Chromosome:
23

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000039843
4416113 - 4422417
6305
ENSAPLT00000024856
4417272 - 4422417
5146
ENSAPLT00000006318
4416113 - 4422417
6305
ENSAPLT00000041188
4416113 - 4422417
6305