About Basic Search Advanced Search Downloads

© 2019-2022 Kanadia Lab,
PNB, Uconn

Construction by: Audrey Weber

Contact Us

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_23_4456394_4460819_R

Intron Information:

Intron Rank:
141683
Intron Class:
major
Intron Phase:
Intron Coordinates:
4456394 - 4460819
Intron Length:
4426

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTAAGGGTC
5'SS Class:
strong_major
3'SS Sequence:
TCCTTCTTTCCAG|C
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
GTAACAT
U12 Branch Point Sequence:
AAGGCAGTAACA
Flanking Amino Acid:
Intron Amino Acid Position:

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
90.7
0.96
0.8
81.9
31.6
Major BPS
53.2
0.08
1.3
63.4
42.8
Major PPT
87.5
0.84
0.7
80
32
Minor 5ss
33.8
-1.8
3.7
49.2
47.3
Minor BPS
44.8
-0.4
2.3
56
42.8

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000023577
Chromosome:
23

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000032984
4456187 - 4475125
18939