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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_23_447824_448446_F

Intron Information:

Intron Rank:
11
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
447824 - 448446
Intron Length:
623

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AGG|GTAAAATAT
5'SS Class:
major
3'SS Sequence:
TATTATTTTATAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTTTTAT
U12 Branch Point Sequence:
TTTTTATTATTT
Flanking Amino Acid:
LQMELQQIMKGNFSSFMQKE
Intron Amino Acid Position:
368

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
74
0.57
1
71
35.5
Major BPS
96.5
1.15
0.6
86
34.2
Major PPT
82.2
0.72
0.8
77
36.6
Minor 5ss
38.5
-1.3
3.2
47.5
48
Minor BPS
62.5
0.47
1.8
84.55
36.3

Associated Gene:

Gene:
GFPT1
Ensembl Gene ID:
ENSAPLG00000000806
Chromosome:
23

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000043804
426624 - 468100
41477
ENSAPLT00000036978
426624 - 457293
30670
ENSAPLT00000018524
426624 - 457293
30670
ENSAPLT00000001166
432527 - 457207
24681