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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_23_448543_448850_F

Intron Information:

Intron Rank:
12
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
448543 - 448850
Intron Length:
308

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CTG|GTAATTGAG
5'SS Class:
major
3'SS Sequence:
ATCTTGTTTACAG|T
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
CTCTGAA
U12 Branch Point Sequence:
TCTCTCTGAATC
Flanking Amino Acid:
RGRVNFDDYTVNLGGLKDHI
Intron Amino Acid Position:
400

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
76.7
0.63
1
66.9
38.5
Major BPS
69.8
0.49
1
61
37.5
Major PPT
82.4
0.73
0.9
76
37.4
Minor 5ss
32.2
-2
3.1
37
41.7
Minor BPS
61.4
0.34
1.4
68.18
37.5

Associated Gene:

Gene:
GFPT1
Ensembl Gene ID:
ENSAPLG00000000806
Chromosome:
23

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000018524
426624 - 457293
30670
ENSAPLT00000001166
432527 - 457207
24681
ENSAPLT00000043804
426624 - 468100
41477
ENSAPLT00000036978
426624 - 457293
30670