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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_23_4493116_4499726_R

Intron Information:

Intron Rank:
6
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
4493116 - 4499726
Intron Length:
6611

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAA|GTGGGTATC
5'SS Class:
major
3'SS Sequence:
TCTCTCATTACAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
CTCTCAT
U12 Branch Point Sequence:
TTTCTCTCATTA
Flanking Amino Acid:
AHLKGSKHQTKIKLSPFPLN
Intron Amino Acid Position:
225

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
74.1
0.57
1
75
35.1
Major BPS
82.6
0.81
0.9
83.3
27.7
Major PPT
83
0.74
0.8
76.8
30.4
Minor 5ss
35.2
-1.7
3.1
45
37.2
Minor BPS
52.1
0.06
1.8
68.67
38

Associated Gene:

Gene:
ZMAT4
Ensembl Gene ID:
ENSAPLG00000006106
Chromosome:
23

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000006326
4492498 - 4547985
55488