About Basic Search Advanced Search Downloads

© 2019-2022 Kanadia Lab,
PNB, Uconn

Construction by: Audrey Weber

Contact Us

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_23_4499824_4508150_R

Intron Information:

Intron Rank:
5
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
4499824 - 4508150
Intron Length:
8327

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GAG|GTGAGGGCA
5'SS Class:
strong_major
3'SS Sequence:
CTTTTCTTTGCAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
AACTAAC
U12 Branch Point Sequence:
CAGTGCACAACT
Flanking Amino Acid:
GKTLDLGELRGLKRSYTCNI
Intron Amino Acid Position:
193

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
85
0.82
0.9
71.8
33.2
Major BPS
68
0.45
0.9
67.6
25.3
Major PPT
92.5
0.96
0.6
88.1
21.6
Minor 5ss
24.1
-3
3.2
29.7
43.3
Minor BPS
44.7
-0.3
2.2
62.33
47.1

Associated Gene:

Gene:
ZMAT4
Ensembl Gene ID:
ENSAPLG00000006106
Chromosome:
23

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000036797
4492498 - 4541266
48769
ENSAPLT00000023409
4499663 - 4547985
48323
ENSAPLT00000006326
4492498 - 4547985
55488