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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_23_4513414_4519183_R

Intron Information:

Intron Rank:
3
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
4513414 - 4519183
Intron Length:
5770

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAT|GTGGGTATA
5'SS Class:
major
3'SS Sequence:
TGTCTCCATCCAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TCTCCAT
U12 Branch Point Sequence:
TTTGTCTCCATC
Flanking Amino Acid:
CPAKKLRSENGSDGDTVDKN
Intron Amino Acid Position:
65

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
72.8
0.54
1.1
76.1
34.8
Major BPS
64.7
0.37
1.3
74.7
40
Major PPT
75.4
0.57
0.9
66.7
39.7
Minor 5ss
34.9
-1.7
3.2
45.8
42.8
Minor BPS
48
-0.1
2
65.51
41

Associated Gene:

Gene:
ZMAT4
Ensembl Gene ID:
ENSAPLG00000006106
Chromosome:
23

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000023409
4499663 - 4547985
48323
ENSAPLT00000006326
4492498 - 4547985
55488
ENSAPLT00000036797
4492498 - 4541266
48769