Gene Search

About Basic Search Advanced Search Downloads

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_23_4531604_4540388_R

Intron Information:

Intron Rank:

Intron Class:

major

Intron Phase:

5UTR

Intron Coordinates:

4531604 - 4540388

Intron Length:

8785

Sequence Information:

Terminal Dinucleotides:

GT-AG

5'SS Sequence:

CAT|GTGAGATGT

5'SS Class:

major

3'SS Sequence:

TTGCTGTGAACAG|A

3'SS Class:

major_PPT

U2 Branch Point Sequence:

AACTAAA

U12 Branch Point Sequence:

TTGCTGTGAACA

Flanking Amino Acid:

5UTR

Intron Amino Acid Position:

5UTR

Site Scores:

Score

LOD

LOD StDev

Match

Match StDev

Major 5ss

75.3

0.6

70.6

Major BPS

68.7

0.47

0.9

67.9

Major PPT

65.6

0.35

1.1

61.5

43.5

Minor 5ss

36.6

-1.5

3.3

51.9

Minor BPS

48.4

-0.1

2.1

65.21

41.1

Associated Gene:

Gene:

ZMAT4

Ensembl Gene ID:

ENSAPLG00000006106

Chromosome:

Associated Transcripts:

Ensembl Transcript ID

Transcript Coordinates

Transcript Length

ENSAPLT00000036797

4492498 - 4541266

48769