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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_23_455672_456362_F

Intron Information:

Intron Rank:
18
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
455672 - 456362
Intron Length:
691

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAA|GTAAGTACC
5'SS Class:
strong_major
3'SS Sequence:
CCCTTTTTTGCAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TCTTCAA
U12 Branch Point Sequence:
TTTTCTTCAACG
Flanking Amino Acid:
NALQQVIARQGRPVIICDKE
Intron Amino Acid Position:
663

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
86.4
0.86
0.9
81.6
29.9
Major BPS
78.2
0.7
1
79.9
32.6
Major PPT
87.4
0.84
0.7
83
25.5
Minor 5ss
38.7
-1.3
2.7
47.6
34.4
Minor BPS
74.3
0.63
1.5
79.65
36.6

Associated Gene:

Gene:
GFPT1
Ensembl Gene ID:
ENSAPLG00000000806
Chromosome:
23

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000018524
426624 - 457293
30670
ENSAPLT00000001166
432527 - 457207
24681
ENSAPLT00000043804
426624 - 468100
41477
ENSAPLT00000036978
426624 - 457293
30670