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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_23_456525_468010_F

Intron Information:

Intron Rank:
19
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
456525 - 468010
Intron Length:
11486

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GAT|GTAAGTACA
5'SS Class:
strong_major
3'SS Sequence:
CTCCTTTTTGCAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTTTCAC
U12 Branch Point Sequence:
CTGCTTTTCACG
Flanking Amino Acid:
FHLAVLRGYDVDRITATRD*
Intron Amino Acid Position:
726

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
85.1
0.83
1
82.7
29.2
Major BPS
90.1
0.99
0.7
91.6
20.3
Major PPT
87.7
0.85
0.7
83.2
25.1
Minor 5ss
38.4
-1.3
2.7
48.5
40.3
Minor BPS
47.4
-0.3
1.8
51.33
43.8

Associated Gene:

Gene:
GFPT1
Ensembl Gene ID:
ENSAPLG00000000806
Chromosome:
23

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000043804
426624 - 468100
41477