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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_23_4577_4671_R

Intron Information:

Intron Rank:
5
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
4577 - 4671
Intron Length:
95

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTAAAGAGA
5'SS Class:
strong_major
3'SS Sequence:
TCCTCCGCACCAG|A
3'SS Class:
major_PPT
U2 Branch Point Sequence:
CACTGAT
U12 Branch Point Sequence:
TCCTCCGCACCA
Flanking Amino Acid:
ATVQCKPISQNLLLVEPMGS
Intron Amino Acid Position:
131

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
80.6
0.72
1
72
39.3
Major BPS
71.2
0.53
1
61
37.5
Major PPT
66.4
0.37
0.9
58.7
37.1
Minor 5ss
31
-2.2
3.2
40
45.7
Minor BPS
44.3
-0.4
2.4
58.78
47

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000025396
Chromosome:
23

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000035409
859 - 6674
5816