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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_23_4579458_4581610_R

Intron Information:

Intron Rank:
3
Intron Class:
major
Intron Phase:
3UTR
Intron Coordinates:
4579458 - 4581610
Intron Length:
2153

Sequence Information:

Terminal Dinucleotides:
GC-AG
5'SS Sequence:
CAG|GCACGGCGG
5'SS Class:
strong_major
3'SS Sequence:
TTTCTCTTTGCAG|C
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TAATAAG
U12 Branch Point Sequence:
GTACCCAGGAGA
Flanking Amino Acid:
3UTR
Intron Amino Acid Position:
3UTR

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
85.2
0.83
1
60.8
43.7
Major BPS
56.1
0.15
1.6
64.3
39.7
Major PPT
92.7
0.96
0.6
88.4
21.2
Minor 5ss
18.8
-3.6
3.9
29.6
43.2
Minor BPS
42
-0.6
1.9
51.72
39.1

Associated Gene:

Gene:
SFRP1
Ensembl Gene ID:
ENSAPLG00000006111
Chromosome:
23

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000006335
4578097 - 4593101
15005