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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_23_4610195_4611109_F

Intron Information:

Intron Rank:
1
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
4610195 - 4611109
Intron Length:
915

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CGG|GTGAGGGCC
5'SS Class:
major
3'SS Sequence:
CTTTCTGTTGCAG|A
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
ACTTGAC
U12 Branch Point Sequence:
CTAAACTTGACT
Flanking Amino Acid:
SKFPAELENRIDRQQFEETV
Intron Amino Acid Position:
38

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
74.8
0.59
1
63.4
36.9
Major BPS
65.1
0.38
1
57
39.5
Major PPT
85.3
0.79
0.8
80.2
31.8
Minor 5ss
24.6
-2.9
3.3
24.9
37
Minor BPS
59.8
0.39
1.6
73.98
42.5

Associated Gene:

Gene:
GOLGA7
Ensembl Gene ID:
ENSAPLG00000028662
Chromosome:
23

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000035544
4609828 - 4614325
4498