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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_23_4611263_4611602_F

Intron Information:

Intron Rank:
2
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
4611263 - 4611602
Intron Length:
340

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTGCGTTTC
5'SS Class:
strong_major
3'SS Sequence:
GTTCTATTACTAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
ATTTAAG
U12 Branch Point Sequence:
TGTTCTATTACT
Flanking Amino Acid:
FLCMETHYEKVLKKIAKFIQ
Intron Amino Acid Position:
89

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
83.7
0.8
0.9
78.5
32
Major BPS
66.8
0.42
1.5
75.7
36.5
Major PPT
70.3
0.46
1
63.7
41.8
Minor 5ss
38.2
-1.3
3.1
52.1
45.1
Minor BPS
59.5
0.38
1.9
82.04
38.9

Associated Gene:

Gene:
GOLGA7
Ensembl Gene ID:
ENSAPLG00000028662
Chromosome:
23

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000035544
4609828 - 4614325
4498