About Basic Search Advanced Search Downloads

© 2019-2022 Kanadia Lab,
PNB, Uconn

Construction by: Audrey Weber

Contact Us

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_23_4611705_4612769_F

Intron Information:

Intron Rank:
3
Intron Class:
minor
Intron Phase:
0
Intron Coordinates:
4611705 - 4612769
Intron Length:
1065

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GTT|GTATCCTTC
5'SS Class:
strong_minor
3'SS Sequence:
CCTTTCTGTGCAG|A
3'SS Class:
minor_BPS
U2 Branch Point Sequence:
TTTCCAT
U12 Branch Point Sequence:
GTTTCCCTAACA
Flanking Amino Acid:
TDPIERGLRVIEITIYEDRG
Intron Amino Acid Position:
123

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
49.8
-0
1.2
51.5
40.4
Major BPS
77.3
0.68
1.2
86.7
32.3
Major PPT
80.6
0.69
0.9
76.1
32.4
Minor 5ss
94
1.48
0.8
90.4
20.7
Minor BPS
75.8
0.81
1.6
85.45
33.3

Associated Gene:

Gene:
GOLGA7
Ensembl Gene ID:
ENSAPLG00000028662
Chromosome:
23

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000035544
4609828 - 4614325
4498