About Basic Search Advanced Search Downloads

© 2019-2022 Kanadia Lab,
PNB, Uconn

Construction by: Audrey Weber

Contact Us

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_23_4616150_4616491_F

Intron Information:

Intron Rank:
4
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
4616150 - 4616491
Intron Length:
342

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AGA|GTGAGTAGG
5'SS Class:
major
3'SS Sequence:
TTTTTTTTTCCAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTCTGAT
U12 Branch Point Sequence:
ATGTTCTGATGT
Flanking Amino Acid:
LSPEEFAFAKEYMANTETYL
Intron Amino Acid Position:
131

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
70.7
0.49
1.1
62.5
43.8
Major BPS
91.3
1.03
0.7
79.6
35.6
Major PPT
98.2
1.08
0.5
92.3
26.6
Minor 5ss
31
-2.2
2.6
30
36.5
Minor BPS
47.3
-0.1
2
66.52
44.3

Associated Gene:

Gene:
GINS4
Ensembl Gene ID:
ENSAPLG00000018162
Chromosome:
23

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000036053
4614372 - 4621203
6832