Gene Search

About Basic Search Advanced Search Downloads

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_23_4632253_4632535_F

Intron Information:

Intron Rank:

Intron Class:

major

Intron Phase:

Intron Coordinates:

4632253 - 4632535

Intron Length:

283

Sequence Information:

Terminal Dinucleotides:

GT-AG

5'SS Sequence:

ATG|GTAAGATCG

5'SS Class:

strong_major

3'SS Sequence:

TGGCCTCTTACAG|G

3'SS Class:

major_PPT

U2 Branch Point Sequence:

CTTTGAG

U12 Branch Point Sequence:

TGTCTTTGAGCT

Flanking Amino Acid:

NHPLYKPYVNGIIAKEPTSL

Intron Amino Acid Position:

Site Scores:

Score

LOD

LOD StDev

Match

Match StDev

Major 5ss

0.76

0.9

67.8

38.1

Major BPS

60.1

0.25

1.6

60.7

45.9

Major PPT

75.8

0.58

0.9

68.6

37.3

Minor 5ss

38.4

-1.3

45.8

43.3

Minor BPS

49.9

0.07

1.7

70.88

39.9

Associated Gene:

Gene:

GPAT4

Ensembl Gene ID:

ENSAPLG00000006157

Chromosome:

Associated Transcripts:

Ensembl Transcript ID

Transcript Coordinates

Transcript Length

ENSAPLT00000021773

4628463 - 4636972

8510

ENSAPLT00000006399

4628463 - 4646179

17717