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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_23_4632834_4633011_F

Intron Information:

Intron Rank:
3
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
4632834 - 4633011
Intron Length:
178

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTGAGTGCT
5'SS Class:
strong_major
3'SS Sequence:
CCTCTTTCTGCAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
CTAGCAT
U12 Branch Point Sequence:
TAGCATGCAACT
Flanking Amino Acid:
LIRYCFLLPLRIALAFTGIS
Intron Amino Acid Position:
178

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
92.2
0.99
0.7
84
26.7
Major BPS
50.9
0.02
1.5
63.4
42.8
Major PPT
84.9
0.79
0.7
80
25.4
Minor 5ss
29.9
-2.3
3.2
41.3
45.2
Minor BPS
41.8
-0.5
2.2
59.89
43.3

Associated Gene:

Gene:
GPAT4
Ensembl Gene ID:
ENSAPLG00000006157
Chromosome:
23

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000021773
4628463 - 4636972
8510
ENSAPLT00000006399
4628463 - 4646179
17717