Gene Search

About Basic Search Advanced Search Downloads

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_23_4633087_4633502_F

Intron Information:

Intron Rank:

Intron Class:

major

Intron Phase:

Intron Coordinates:

4633087 - 4633502

Intron Length:

416

Sequence Information:

Terminal Dinucleotides:

GT-AG

5'SS Sequence:

AAG|GTGAGTTGG

5'SS Class:

strong_major

3'SS Sequence:

TTCTGGGCCGCAG|G

3'SS Class:

major_PPT

U2 Branch Point Sequence:

ATCACAG

U12 Branch Point Sequence:

GGGGTGATAGTT

Flanking Amino Acid:

TTVVGYLPNGRCKEFLSKHV

Intron Amino Acid Position:

203

Site Scores:

Score

LOD

LOD StDev

Match

Match StDev

Major 5ss

89.7

0.94

0.8

74.8

38.1

Major BPS

-0.1

1.5

60.7

37.6

Major PPT

67.9

0.4

61.1

40.1

Minor 5ss

34.2

-1.8

2.8

40.6

45.6

Minor BPS

34.7

-1

2.1

45.43

40.2

Associated Gene:

Gene:

GPAT4

Ensembl Gene ID:

ENSAPLG00000006157

Chromosome:

Associated Transcripts:

Ensembl Transcript ID

Transcript Coordinates

Transcript Length

ENSAPLT00000021773

4628463 - 4636972

8510

ENSAPLT00000006399

4628463 - 4646179

17717