Gene Search

About Basic Search Advanced Search Downloads

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_23_4635045_4635275_F

Intron Information:

Intron Rank:

Intron Class:

major

Intron Phase:

Intron Coordinates:

4635045 - 4635275

Intron Length:

231

Sequence Information:

Terminal Dinucleotides:

GT-AG

5'SS Sequence:

AAG|GTATGAGAA

5'SS Class:

strong_major

3'SS Sequence:

ACTGCCTCTGTAG|T

3'SS Class:

major_PPT

U2 Branch Point Sequence:

CTTTCAT

U12 Branch Point Sequence:

CTTTCATGAACT

Flanking Amino Acid:

GATVYPVAIKYDPQFGDAFW

Intron Amino Acid Position:

351

Site Scores:

Score

LOD

LOD StDev

Match

Match StDev

Major 5ss

83.3

0.78

0.9

31.2

Major BPS

87.6

0.93

0.9

89.3

Major PPT

69.5

0.44

0.9

62.7

33.8

Minor 5ss

35.8

-1.6

3.3

46.4

48.9

Minor BPS

67.9

0.64

1.8

86.41

39.1

Associated Gene:

Gene:

GPAT4

Ensembl Gene ID:

ENSAPLG00000006157

Chromosome:

Associated Transcripts:

Ensembl Transcript ID

Transcript Coordinates

Transcript Length

ENSAPLT00000021773

4628463 - 4636972

8510

ENSAPLT00000006399

4628463 - 4646179

17717