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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_23_4648775_4649057_R

Intron Information:

Intron Rank:
2
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
4648775 - 4649057
Intron Length:
283

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTGAGTGAC
5'SS Class:
strong_major
3'SS Sequence:
TGCCTCTCTGCAG|A
3'SS Class:
major_PPT
U2 Branch Point Sequence:
CTGTGAC
U12 Branch Point Sequence:
CTGGCTGTGACG
Flanking Amino Acid:
DEQGNIVTKKIIRKVVRQLG
Intron Amino Acid Position:
102

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
91.5
0.98
0.7
80.9
25.7
Major BPS
59
0.22
1.2
52.4
43.3
Major PPT
79
0.65
0.8
73
31.9
Minor 5ss
27.5
-2.6
3
33.8
42.3
Minor BPS
44.5
-0.5
2.2
49.14
45.6

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000024040
Chromosome:
23

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000022878
4646171 - 4650242
4072