About Basic Search Advanced Search Downloads
Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_23_4658331_4658621_R


Intron Information:

Intron Rank:
24

Intron Class:
major

Intron Phase:
2

Intron Coordinates:
4658331 - 4658621

Intron Length:
291

Sequence Information:

Terminal Dinucleotides:
GT-AG

5'SS Sequence:
AAT|GTATGAGGC

5'SS Class:
major

3'SS Sequence:
TCTCTCCTACCAG|G

3'SS Class:
major_PPT

U2 Branch Point Sequence:
CTGTCAC

U12 Branch Point Sequence:
TCTCTCCTACCA

Flanking Amino Acid:
ELVTRMTLEQMEESAAVPQV

Intron Amino Acid Position:
867

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev

Major 5ss
69.3
0.45
1.1
58.9
38.6

Major BPS
62.6
0.31
1.2
66.7
39.9

Major PPT
77.2
0.61
0.9
70.5
34.9

Minor 5ss
39.3
-1.2
3.4
54.3
43.4

Minor BPS
48.9
-0
1.9
64.87
41.6

Associated Gene:

Gene:
ANK1

Ensembl Gene ID:

Chromosome:
23

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length

4650263 - 4681369
31107

4650263 - 4675945
25683