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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_23_4665545_4665852_R

Intron Information:

Intron Rank:
8
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
4665545 - 4665852
Intron Length:
308

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTGAGAGCC
5'SS Class:
strong_major
3'SS Sequence:
CTTCTCTCCCCAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
CTCTGAA
U12 Branch Point Sequence:
AGCCTCTGAACC
Flanking Amino Acid:
RGAQIETRTKDELTPLHCAA
Intron Amino Acid Position:
275

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
85.8
0.84
0.8
72.1
31.2
Major BPS
69.8
0.49
1
61
37.5
Major PPT
80.7
0.69
0.7
73
31.8
Minor 5ss
26.3
-2.7
3.1
33.4
42
Minor BPS
54.5
0.12
1.5
59.84
38.7

Associated Gene:

Gene:
ANK1
Ensembl Gene ID:
ENSAPLG00000006189
Chromosome:
23

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000027701
4650263 - 4681369
31107
ENSAPLT00000006487
4650263 - 4675945
25683