About Basic Search Advanced Search Downloads

© 2019-2022 Kanadia Lab,
PNB, Uconn

Construction by: Audrey Weber

Contact Us

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_23_4724607_4725601_R

Intron Information:

Intron Rank:
15
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
4724607 - 4725601
Intron Length:
995

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AGC|GTAAGAGTG
5'SS Class:
major
3'SS Sequence:
TTATTTACGTTAG|A
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTTTTAT
U12 Branch Point Sequence:
TTATTTTTATTT
Flanking Amino Acid:
HQKEKDSEASMVKSVSWEKK
Intron Amino Acid Position:
813

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
64.6
0.35
1.4
60.8
44.4
Major BPS
96.5
1.15
0.6
86
34.2
Major PPT
70.5
0.46
1
71.6
39.2
Minor 5ss
35
-1.7
3.5
42.9
44.4
Minor BPS
64.7
0.54
1.5
79.8
36.8

Associated Gene:

Gene:
KAT6A
Ensembl Gene ID:
ENSAPLG00000006273
Chromosome:
23

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000006533
4716474 - 4753980
37507