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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_23_4725813_4726891_R

Intron Information:

Intron Rank:
14
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
4725813 - 4726891
Intron Length:
1079

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
TCA|GTGAGTACC
5'SS Class:
major
3'SS Sequence:
TATTACTGTTCAG|A
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTATTAC
U12 Branch Point Sequence:
TGTTGTTGATCA
Flanking Amino Acid:
HLRMLDFRSDQFVIIRREKL
Intron Amino Acid Position:
742

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
72.8
0.54
1
69
35.7
Major BPS
74.8
0.62
1.1
66
40.5
Major PPT
76.5
0.6
1
73.9
41
Minor 5ss
33.7
-1.9
2.7
43.9
37
Minor BPS
47.6
-0.1
2.1
64.74
41.8

Associated Gene:

Gene:
KAT6A
Ensembl Gene ID:
ENSAPLG00000006273
Chromosome:
23

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000006533
4716474 - 4753980
37507