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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_23_4729930_4731107_R

Intron Information:

Intron Rank:
10
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
4729930 - 4731107
Intron Length:
1178

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTACGAGTG
5'SS Class:
strong_major
3'SS Sequence:
CCTTTGCTTACAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TCTTCAA
U12 Branch Point Sequence:
TTTTCTTCACCT
Flanking Amino Acid:
YSSPYPQEYSRLPKLYLCEF
Intron Amino Acid Position:
532

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
81.3
0.74
1
70
40.8
Major BPS
78.2
0.7
1
79.9
32.6
Major PPT
82.3
0.73
0.8
75.6
33
Minor 5ss
33
-1.9
3.6
46.7
48.6
Minor BPS
66.5
0.6
1.8
87.98
37.6

Associated Gene:

Gene:
KAT6A
Ensembl Gene ID:
ENSAPLG00000006273
Chromosome:
23

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000006533
4716474 - 4753980
37507