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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_23_4736993_4737478_R

Intron Information:

Intron Rank:
4
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
4736993 - 4737478
Intron Length:
486

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GTG|GTAGGTGAC
5'SS Class:
major
3'SS Sequence:
TGCTTTCCTGTAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
GTATCAC
U12 Branch Point Sequence:
TTGGTATCACTT
Flanking Amino Acid:
LISCADCGNSGHPSCLKFSP
Intron Amino Acid Position:
238

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
78.1
0.66
1
68.5
36.9
Major BPS
60.6
0.26
1.3
65.7
41
Major PPT
78.5
0.64
0.8
73.9
31.3
Minor 5ss
31.7
-2.1
3.4
39.3
41.1
Minor BPS
42.3
-0.5
2
60.26
44

Associated Gene:

Gene:
KAT6A
Ensembl Gene ID:
ENSAPLG00000006273
Chromosome:
23

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000006533
4716474 - 4753980
37507