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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_23_4737588_4751828_R

Intron Information:

Intron Rank:
3
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
4737588 - 4751828
Intron Length:
14241

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTAAGGCCC
5'SS Class:
strong_major
3'SS Sequence:
TTTTCTCTCCTAG|C
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
GTTTTAT
U12 Branch Point Sequence:
AGTGGTTTTATT
Flanking Amino Acid:
VCLLPHEKDKPVAEPIPICS
Intron Amino Acid Position:
202

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
87.6
0.89
0.9
71.3
37.2
Major BPS
78.7
0.71
1.2
71.7
44.6
Major PPT
83.7
0.76
0.7
77.7
31.1
Minor 5ss
32
-2.1
3.3
42.6
44.4
Minor BPS
45.1
-0.3
2.1
62.05
42.9

Associated Gene:

Gene:
KAT6A
Ensembl Gene ID:
ENSAPLG00000006273
Chromosome:
23

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000006533
4716474 - 4753980
37507