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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_23_4738_4809_R

Intron Information:

Intron Rank:
4
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
4738 - 4809
Intron Length:
72

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTGAGTGTG
5'SS Class:
strong_major
3'SS Sequence:
CTCATTTCTAAAG|A
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTCTCAC
U12 Branch Point Sequence:
GTTTTCTCACCC
Flanking Amino Acid:
GQDQFALNAKIVEVEKRLAQ
Intron Amino Acid Position:
109

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
91.7
0.98
0.7
81.3
32.8
Major BPS
85
0.87
0.8
85.6
23
Major PPT
70.1
0.45
1
70.3
34
Minor 5ss
30.9
-2.2
3.2
39.6
46.4
Minor BPS
57
0.2
1.8
71
40.3

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000025396
Chromosome:
23

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000035409
859 - 6674
5816