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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_23_4752600_4752712_R

Intron Information:

Intron Rank:
2
Intron Class:
major
Intron Phase:
5UTR
Intron Coordinates:
4752600 - 4752712
Intron Length:
113

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GAG|GTGAGACTT
5'SS Class:
strong_major
3'SS Sequence:
TTCCTCTCTGCAG|T
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTCTAAT
U12 Branch Point Sequence:
AAATTTCTAATA
Flanking Amino Acid:
5UTR
Intron Amino Acid Position:
5UTR

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
88
0.9
0.8
80.6
33.8
Major BPS
94.5
1.11
0.6
92.2
14.6
Major PPT
85.6
0.8
0.7
80.7
24.5
Minor 5ss
32.5
-2
3.3
47.4
48
Minor BPS
51.3
0.04
1.6
60.06
33.3

Associated Gene:

Gene:
KAT6A
Ensembl Gene ID:
ENSAPLG00000006273
Chromosome:
23

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000006533
4716474 - 4753980
37507