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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_23_4759319_4760670_F

Intron Information:

Intron Rank:
1
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
4759319 - 4760670
Intron Length:
1352

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTGCGGCCG
5'SS Class:
major
3'SS Sequence:
TTCTTTTGAACAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
AATTAAT
U12 Branch Point Sequence:
TTCTTTTGAACA
Flanking Amino Acid:
FLHRVVDTFQDYFGVCSEVM
Intron Amino Acid Position:
92

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
72.6
0.53
1.1
54.2
44.5
Major BPS
83
0.82
0.8
82
24.9
Major PPT
78.5
0.64
1
76.6
36.3
Minor 5ss
24.6
-2.9
3.2
30.3
42.9
Minor BPS
67.6
0.55
1.4
75.34
36.3

Associated Gene:

Gene:
AP3M2
Ensembl Gene ID:
ENSAPLG00000006314
Chromosome:
23

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000033805
4758981 - 4769765
10785
ENSAPLT00000031697
4758981 - 4771712
12732
ENSAPLT00000006554
4758981 - 4781263
22283
ENSAPLT00000041282
4758981 - 4767108
8128