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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_23_4761434_4761973_F

Intron Information:

Intron Rank:
3
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
4761434 - 4761973
Intron Length:
540

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTATGGGAG
5'SS Class:
strong_major
3'SS Sequence:
TTTATTGTTGCAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
ATTTTAT
U12 Branch Point Sequence:
GTTCACGTAACC
Flanking Amino Acid:
EEIDAIIDKSGSTITAEIQG
Intron Amino Acid Position:
195

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
80.4
0.72
1
65.7
40.1
Major BPS
87.7
0.94
0.8
77.7
36.7
Major PPT
85.7
0.8
0.9
80.7
36.7
Minor 5ss
34.7
-1.7
3.5
45.4
49.7
Minor BPS
51.7
0.03
2.2
70.02
40.7

Associated Gene:

Gene:
AP3M2
Ensembl Gene ID:
ENSAPLG00000006314
Chromosome:
23

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000031697
4758981 - 4771712
12732
ENSAPLT00000006554
4758981 - 4781263
22283
ENSAPLT00000041282
4758981 - 4767108
8128
ENSAPLT00000033805
4758981 - 4769765
10785