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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_23_4762943_4763811_F

Intron Information:

Intron Rank:
5
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
4762943 - 4763811
Intron Length:
869

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GAA|GTAAGTGGT
5'SS Class:
strong_major
3'SS Sequence:
GTCTTTATTCTAG|T
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TCTTTAT
U12 Branch Point Sequence:
CTGTCTTTATTC
Flanking Amino Acid:
RLLSYHVSAQNLVAIPVYVK
Intron Amino Acid Position:
268

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
85.5
0.84
0.9
79
35.3
Major BPS
83.9
0.84
1
73.9
41.3
Major PPT
77.8
0.63
0.9
70.3
40.1
Minor 5ss
36.1
-1.6
3.3
49.5
41.2
Minor BPS
59.4
0.27
1.6
65.28
41.5

Associated Gene:

Gene:
AP3M2
Ensembl Gene ID:
ENSAPLG00000006314
Chromosome:
23

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000006554
4758981 - 4781263
22283
ENSAPLT00000041282
4758981 - 4767108
8128
ENSAPLT00000033805
4758981 - 4769765
10785
ENSAPLT00000031697
4758981 - 4771712
12732