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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_23_4764020_4764836_F

Intron Information:

Intron Rank:
6
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
4764020 - 4764836
Intron Length:
817

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTGAGAGAA
5'SS Class:
strong_major
3'SS Sequence:
TTGTTCCTTGAAG|T
3'SS Class:
major_PPT
U2 Branch Point Sequence:
ACTGTAT
U12 Branch Point Sequence:
TTCTGCTTGACT
Flanking Amino Acid:
GTHIFDPVTKLLSWDVGKIN
Intron Amino Acid Position:
338

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
87.1
0.87
0.8
76.5
26.8
Major BPS
50.1
0
1.4
51.4
43.9
Major PPT
75
0.56
1
76.1
32.9
Minor 5ss
24.3
-3
3.1
28.7
43.6
Minor BPS
71
0.74
1.8
87.07
39.1

Associated Gene:

Gene:
AP3M2
Ensembl Gene ID:
ENSAPLG00000006314
Chromosome:
23

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000041282
4758981 - 4767108
8128
ENSAPLT00000033805
4758981 - 4769765
10785
ENSAPLT00000031697
4758981 - 4771712
12732
ENSAPLT00000006554
4758981 - 4781263
22283