About Basic Search Advanced Search Downloads

© 2019-2022 Kanadia Lab,
PNB, Uconn

Construction by: Audrey Weber

Contact Us

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_23_4768902_4769438_F

Intron Information:

Intron Rank:
8
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
4768902 - 4769438
Intron Length:
537

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
TAG|GTTAGTAAA
5'SS Class:
strong_major
3'SS Sequence:
CTCCGCTTTCCAG|T
3'SS Class:
major_PPT
U2 Branch Point Sequence:
ATTTTAT
U12 Branch Point Sequence:
TCTTTATTATTT
Flanking Amino Acid:
PPESPCREVLVEWHLHLLQN
Intron Amino Acid Position:
424

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
85.5
0.84
1.1
84.4
27.7
Major BPS
87.7
0.94
0.8
77.7
36.7
Major PPT
77.7
0.62
0.8
68.3
37.4
Minor 5ss
31.4
-2.1
2.4
34
41.4
Minor BPS
56.2
0.27
1.8
76.22
41

Associated Gene:

Gene:
AP3M2
Ensembl Gene ID:
ENSAPLG00000006314
Chromosome:
23

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000033805
4758981 - 4769765
10785