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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_23_4768902_4781163_F

Intron Information:

Intron Rank:
8
Intron Class:
major-like
Intron Phase:
1
Intron Coordinates:
4768902 - 4781163
Intron Length:
12262

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
TAG|GTTAGTAAA
5'SS Class:
strong_major
3'SS Sequence:
AACATGGCCATAG|G
3'SS Class:
degenerate_major
U2 Branch Point Sequence:
TTCTAAC
U12 Branch Point Sequence:
TTATTTCTAACA
Flanking Amino Acid:
PPESPCREVLGL*
Intron Amino Acid Position:
424

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
85.5
0.84
1.1
84.4
27.7
Major BPS
84.6
0.86
0.8
83.9
22.3
Major PPT
51.1
0.03
1
42.5
37.6
Minor 5ss
31.4
-2.1
2.4
34
41.4
Minor BPS
64.8
0.46
1.6
76.45
34.3

Associated Gene:

Gene:
AP3M2
Ensembl Gene ID:
ENSAPLG00000006314
Chromosome:
23

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000006554
4758981 - 4781263
22283